PAYE bill reconciliation
Match FPS, EPS, payroll journal, HMRC PAYE account and bank payments each month.
Payroll control is monthly, not annual. PAYE differences are easier to fix before payment than months later when HMRC statements and ledgers have drifted apart. This guide explains PAYE bill reconciliation so PAYE, the payroll journal and the HMRC account tell the same story.
For wider context, use Payroll and HR . If the topic affects a filing deadline, software choice or tax treatment, confirm the live position before acting. The workflow below is designed to keep the evidence in one place so the owner, bookkeeper and accountant can all review the same record.
Official point to verify
GOV.UK says employers pay HMRC the tax, National Insurance and other deductions reported on the FPS, reduced by any EPS adjustments, normally by the 22nd of the month when paying electronically. Check the current wording in GOV.UK running payroll and paying HMRC guidance before making a binding filing, software or tax decision.
What to control
| Area | Control | Why it matters |
|---|---|---|
| Payroll reports | Start from the final FPS and EPS values | The liability comes from submissions |
| Ledger | Compare PAYE, NIC and student loan control accounts | Bookkeeping should match payroll |
| HMRC account | Check what HMRC says is due | Processing timing can create differences |
| Payment | Match bank payment reference and period | Wrong references can allocate payments incorrectly |
Review routine
Close each payroll period in a fixed order: approve pay data, submit the FPS, post the payroll journal, check any EPS adjustments, reconcile the PAYE liability and schedule the payment. Keep evidence of corrections next to the period they affect.
A useful review note should answer three questions: what source evidence was used, what judgement was applied, and who approved the treatment. Keep that note beside the transaction or period report rather than in a separate inbox.
Common mistakes
- Paying the ledger balance without checking HMRC
- Ignoring small student loan differences
- Using the same payment reference for the wrong period
The best prevention is a short, repeated checklist. If a control is too complicated to run every month or quarter, it will probably fail when the deadline is close.
How ReAI helps
ReAI links payroll journals and bookkeeping review, so payroll liabilities do not sit apart from the accounts. The result is a cleaner month-end file and fewer surprises when PAYE is paid or queried. For hands-on help with setup, see Accounting Assistance for Small Businesses .
Summary
Treat PAYE bill reconciliation as a recurring accounting control, not a one-off admin task. Put the source data, review owner, exception list and submission evidence in the same system before the deadline arrives. That makes compliance work easier to check and much less dependent on memory.